When do distances in a PCA reflex genetic ancestry? if two individuals cluster togeather does that mean they are some the same populations? Here we present a method that you can use to interpret you genetic PCA plot.
Jan van Waaij* 🖂, Song Li* , Genís Garcia-Erill* , Anders Albrechtsen, Carsten Wiuf🖂;
A method for accurate PCA for large scale genetic data. Analyse millions of sites for all 500000 individuals in UKbiobank on your labtop
Zilong Li🖂, Jonas Meisner, Anders Albrechtsen🖂
Using sequencing data from simulations and closely related human populations, we show that our approach is better at distinguishing closely related populations than standard admixture and principal component analysis software. We further show that HaploNet is fast and highly scalable by applying it to genotype array data of the UK Biobank. U
Jonas Meisner🖂, Anders Albrechtsen
Framework for joint determination of individual sex and sex-linked scaffolds for non-model organism based on depth of coverage
Nursyifa C.* ; Brüniche-Olsen A.* ; Garcia-Erill G.; Heller R.🖂; Albrechtsen A.🖂
Inference of the site frequency spectrum (SFS) from low-depth sequencing data.
Rasmussen M.S.; Garcia-Erill G.; Korneliussen T.S.; Wiuf C.; Albrechtsen A.
Estimating relatedness coefficients for admixture samples with low depth sequencing. Also works for F1 and other recently admixed indivudals.
Nøhr A.K.; Hanghøj K.; Garcia-Erill G.; Li Z.; Moltke I.; Albrechtsen A.
KING, RO, R1, statistics for relatedness based only two individuals. No reference panel or allele frequencies needed
Waples R.K.; Albrechtsen A.; Moltke I.